Sander Wuyts, Renato Alves, Maria Zimmermann-Kogadeeva, Suguru Nishijima, Sonja Blasche, Marja Driessen, Philipp E Geyer, Rajna Hercog, Ece Kartal, Lisa Maier, Johannes B Müller, Sarela Garcia Santamarina, Thomas Sebastian B Schmidt, Daniel C Sevin, Anja Telzerow, Peter V Treit, Tobias Wenzel, Athanasios Typas, Kiran R Patil, Matthias Mann, Michael Kuhn, Peer Bork. Consistency across multi-omics layers in a drug-perturbed gut microbial community.Molecular systems biology. 2023, 19 (9): e11525
Javier Ruiz, Miguel de Celis, Juan Diaz-Colunga, Jean Cc Vila, Belen Benitez-Dominguez, Javier Vicente, Antonio Santos, Alvaro Sanchez, Ignacio Belda. Predictability of the community-function landscape in wine yeast ecosystems.Molecular systems biology. 2023, 19 (9): e11613
Kyle Mohler, Jack M Moen, Svetlana Rogulina, Jesse Rinehart. System-wide optimization of an orthogonal translation system with enhanced biological tolerance.Molecular systems biology. 2023, 19 (8): e10591
Benjamin J Livesey, Joseph A Marsh. Updated benchmarking of variant effect predictors using deep mutational scanning.Molecular systems biology. 2023, 19 (8): e11474
Matthias Weith, Jan Großbach, Mathieu Clement-Ziza, Ludovic Gillet, María Rodríguez-López, Samuel Marguerat, Christopher T Workman, Paola Picotti, Jürg Bähler, Ruedi Aebersold, Andreas Beyer. Genetic effects on molecular network states explain complex traits.Molecular systems biology. 2023, 19 (8): e11493
Lara Urban, Albert Perlas, Olga Francino, Joan Martí-Carreras, Brenda A Muga, Jenniffer W Mwangi, Laura Boykin Okalebo, Jo-Ann L Stanton, Amanda Black, Nick Waipara, Claudia Fontsere, David Eccles, Harika Urel, Tim Reska, Hernán E Morales, Marc Palmada-Flores, Tomas Marques-Bonet, Mrinalini Watsa, Zane Libke, Gideon Erkenswick, Cock van Oosterhout. Real-time genomics for One Health.Molecular systems biology. 2023, 19 (8): e11686
Amandine Moretton, Savvas Kourtis, Antoni Gañez Zapater, Chiara Calabrò, Maria Lorena Espinar Calvo, Frédéric Fontaine, Evangelia Darai, Etna Abad Cortel, Samuel Block, Laura Pascual-Reguant, Natalia Pardo-Lorente, Ritobrata Ghose, Matthew G Vander Heiden, Ana Janic, André C Müller, Joanna I Loizou, Sara Sdelci. A metabolic map of the DNA damage response identifies PRDX1 in the control of nuclear ROS scavenging and aspartate availability.Molecular systems biology. 2023, 19 (7): e11267
Lucas van Duin, Robert Krautz, Sarah Rennie, Robin Andersson. Transcription factor expression is the main determinant of variability in gene co-activity.Molecular systems biology. 2023, 19 (7): e11392
Maria Polychronidou, Jingyi Hou, M Madan Babu, Prisca Liberali, Ido Amit, Bart Deplancke, Galit Lahav, Shalev Itzkovitz, Matthias Mann, Julio Saez-Rodriguez, Fabian Theis, Roland Eils. Single-cell biology: what does the future hold?Molecular systems biology. 2023, 19 (7): e11799
Max A English, Miguel A Alcantar, James J Collins. A self-propagating, barcoded transposon system for the dynamic rewiring of genomic networks.Molecular systems biology. 2023, 19 (6): e11398
Mohammad Lotfollahi, Anna Klimovskaia Susmelj, Carlo De Donno, Leon Hetzel, Yuge Ji, Ignacio L Ibarra, Sanjay R Srivatsan, Mohsen Naghipourfar, Riza M Daza, Beth Martin, Jay Shendure, Jose L McFaline-Figueroa, Pierre Boyeau, F Alexander Wolf, Nafissa Yakubova, Stephan Günnemann, Cole Trapnell, David Lopez-Paz, Fabian J Theis. Predicting cellular responses to complex perturbations in high-throughput screens.Molecular systems biology. 2023, 19 (6): e11517