SUBJECTS : Dna | Biochemistry | Computational Biology | Genomics | Molecular Biology | Rn
Nucleic Acids Research: 2024, vol: , issue:
- 1)- Max Schubach, Thorben Maass, Lusiné Nazaretyan, Sebastian Röner, Martin Kircher. CADD v1.7: using protein language models, regulatory CNNs and other nucleotide-level scores to improve genome-wide variant predictions. Nucleic acids research. 2024, 52 (D1): D1143-D1154
Cited : 36Read More - 2)- Zbyslaw Sondka, Nidhi Bindal Dhir, Denise Carvalho-Silva, Steven Jupe, Madhumita, Karen McLaren, Mike Starkey, Sari Ward, Jennifer Wilding, Madiha Ahmed, Joanna Argasinska, David Beare, Manpreet Singh Chawla, Stephen Duke, Ilaria Fasanella, Avirup Guha Neogi, Susan Haller, Balazs Hetenyi, Leonie Hodges, Alex Holmes, Rachel Lyne, Thomas Maurel, Sumodh Nair, Helder Pedro, Amaia Sangrador-Vegas, Helen Schuilenburg, Zoe Sheard, Siew Yit Yong, Jon Teague. COSMIC: a curated database of somatic variants and clinical data for cancer. Nucleic acids research. 2024, 52 (D1): D1210-D1217Cited : 67Read More
- 3)- Julian E Sale, Barry L Stoddard. Fifty years of Nucleic Acids Research. Nucleic acids research. 2024, 52 (1): 1-3Cited : 0Read More
- 4)- Gary W Foo, Christopher D Leichthammer, Ibrahim M Saita, Nicholas D Lukas, Izabela Z Batko, David E Heinrichs, David R Edgell. Intein-based thermoregulated meganucleases for containment of genetic material. Nucleic acids research. 2024, : Cited : 1Read More
- 5)- Damian M Janecki, Raneet Sen, Natalia Szóstak, Arkadiusz Kajdasz, Martyna Kordyś, Kinga Plawgo, Dmytro Pandakov, Anna Philips, Zbigniew Warkocki. LINE-1 mRNA 3' end dynamics shape its biology and retrotransposition potential. Nucleic acids research. 2024, : Cited : 0Read More
- 6)- Carson J Bryant, Mason A McCool, Gabriela T Rosado González, Laura Abriola, Yulia V Surovtseva, Susan J Baserga. Discovery of novel microRNA mimic repressors of ribosome biogenesis. Nucleic acids research. 2024, : Cited : 0Read More
- 7)- Shijun Li, Bing Liu, Min Tan, Franceline Juillard, Agnieszka Szymula, Ángel L Álvarez, Nicholas Van Sciver, Athira George, Akshaya Ramachandran, Komal Raina, Vinayak Sadasivam Tumuluri, Catarina N Costa, J Pedro Simas, Kenneth M Kaye. Kaposi's sarcoma herpesvirus exploits the DNA damage response to circularize its genome. Nucleic acids research. 2024, : Cited : 0Read More
- 8)- Ekaterina Kozaeva, Zacharias S Nielsen, Manuel Nieto-Domínguez, Pablo I Nikel. The pAblo·pCasso self-curing vector toolset for unconstrained cytidine and adenine base-editing in Gram-negative bacteria. Nucleic acids research. 2024, : Cited : 6Read More
- 9)- Ádám Póti, Dávid Szüts, Jelena Vermezovic. Mutational profile of the regenerative process and de novo genome assembly of the planarian Schmidtea polychroa. Nucleic acids research. 2024, : Cited : 0Read More
- 10)- Yilong Feng, Xing Ma, Ying Yang, Shentong Tao, Asgar Ahmed, Zhiyun Gong, Xuejiao Cheng, Wenli Zhang. The roles of DNA methylation on pH dependent i-motif (iM) formation in rice. Nucleic acids research. 2024, : Cited : 5Read More
- 11)- Alexandra Nusawardhana, Lindsey M Pale, Claudia M Nicolae, George-Lucian Moldovan. USP1-dependent nucleolytic expansion of PRIMPOL-generated nascent DNA strand discontinuities during replication stress. Nucleic acids research. 2024, : Cited : 5Read More
- 12)- Paolo Pizzul, Erika Casari, Carlo Rinaldi, Marco Gnugnoli, Marco Mangiagalli, Renata Tisi, Maria Pia Longhese. Rif2 interaction with Rad50 counteracts Tel1 functions in checkpoint signalling and DNA tethering by releasing Tel1 from MRX binding. Nucleic acids research. 2024, : Cited : 3Read More
- 13)- Elena Manakova, Edvardas Golovinas, Reda Pocevičiūtė, Giedrius Sasnauskas, Arunas Silanskas, Danielis Rutkauskas, Marija Jankunec, Evelina Zagorskaitė, Edvinas Jurgelaitis, Algirdas Grybauskas, Česlovas Venclovas, Mindaugas Zaremba. The missing part: the Archaeoglobus fulgidus Argonaute forms a functional heterodimer with an N-L1-L2 domain protein. Nucleic acids research. 2024, : Cited : 3Read More
- 14)- Hitomaru Miyamoto, Hiroaki Kobayashi, Nanami Kishima, Kyotaro Yamazaki, Shusei Hamamichi, Narumi Uno, Satoshi Abe, Yosuke Hiramuki, Kanako Kazuki, Kazuma Tomizuka, Yasuhiro Kazuki. Rapid human genomic DNA cloning into mouse artificial chromosome via direct chromosome transfer from human iPSC and CRISPR/Cas9-mediated translocation. Nucleic acids research. 2024, : Cited : 1Read More
- 15)- Roshan Vaid, Ketan Thombare, Akram Mendez, Rebeca Burgos-Panadero, Anna Djos, Daniel Jachimowicz, Kristina Ihrmark Lundberg, Christoph Bartenhagen, Navinder Kumar, Conny Tümmler, Carina Sihlbom, Susanne Fransson, John Inge Johnsen, Per Kogner, Tommy Martinsson, Matthias Fischer, Tanmoy Mondal. METTL3 drives telomere targeting of TERRA lncRNA through m6A-dependent R-loop formation: a therapeutic target for ALT-positive neuroblastoma. Nucleic acids research. 2024, : Cited : 6Read More
- 16)- Cong Truc Le, Trung Duc Nguyen, Tuan Anh Nguyen. Two-motif model illuminates DICER cleavage preferences. Nucleic acids research. 2024, : Cited : 1Read More
- 17)- Wen-Qing Yang, Jian-Yang Ge, Xiaofeng Zhang, Wen-Yu Zhu, Lin Lin, Yigong Shi, Beisi Xu, Ru-Juan Liu. THUMPD2 catalyzes the N2-methylation of U6 snRNA of the spliceosome catalytic center and regulates pre-mRNA splicing and retinal degeneration. Nucleic acids research. 2024, : Cited : 2Read More
- 18)- Yazmín Fuentes, Valeria Olguín, Brenda López-Ulloa, Dafne Mendonça, Hade Ramos, Ana Luiza Abdalla, Gabriel Guajardo-Contreras, Meijuan Niu, Barbara Rojas-Araya, Andrew J Mouland, Marcelo López-Lastra. Heterogeneous nuclear ribonucleoprotein K promotes cap-independent translation initiation of retroviral mRNAs. Nucleic acids research. 2024, : Cited : 2Read More
- 19)- Sang Woo Jin, Youngmo Seong, Dayoung Yoon, Young-Soo Kwon, Hoseok Song. Dissolution of ribonucleoprotein condensates by the embryonic stem cell protein L1TD1. Nucleic acids research. 2024, : Cited : 1Read More
- 20)- Austin Stone, Sadikshya Rijal, Rong Zhang, Xiao-Jun Tian. Enhancing circuit stability under growth feedback with supplementary repressive regulation. Nucleic acids research. 2024, : Cited : 2Read More
- 21)- Pál Albert, Bence Varga, Györgyi Ferenc, Antal Kiss. Conversion of the CG specific M.MpeI DNA methyltransferase into an enzyme predominantly methylating CCA and CCC sites. Nucleic acids research. 2024, : Cited : 0Read More
- 22)- Siuli Rakesh, L Aravind, Arunkumar Krishnan. Reappraisal of the DNA phosphorothioate modification machinery: uncovering neglected functional modalities and identification of new counter-invader defense systems. Nucleic acids research. 2024, : Cited : 2Read More
- 23)- Giulia Giacomini, Sandra Piquet, Odile Chevallier, Juliette Dabin, Siau-Kun Bai, Byungjin Kim, Robert Siddaway, Brian Raught, Etienne Coyaud, Chun-Min Shan, Robert J D Reid, Takenori Toda, Rodney Rothstein, Viviana Barra, Therese Wilhelm, Sabah Hamadat, Chloé Bertin, Alexander Crane, Frank Dubois, Ignasi Forne, Axel Imhof, Pratiti Bandopadhayay, Rameen Beroukhim, Valeria Naim, Songtao Jia, Cynthia Hawkins, Beatrice Rondinelli, Sophie E Polo. Aberrant DNA repair reveals a vulnerability in histone H3.3-mutant brain tumors. Nucleic acids research. 2024, : Cited : 2Read More
- 24)- Yong Zhang, Jing-Bo Zhou, Yue Yin, En-Duo Wang, Xiao-Long Zhou. Multifaceted roles of t6A biogenesis in efficiency and fidelity of mitochondrial gene expression. Nucleic acids research. 2024, : Cited : 3Read More
- 25)- Kenta Nitahara, Atsuki Kawamura, Yuka Kitamura, Kiyoko Kato, Satoshi H Namekawa, Masaaki Nishiyama. Chromatin remodeler CHD8 is required for spermatogonial proliferation and early meiotic progression. Nucleic acids research. 2024, : Cited : 2Read More
- 26)- Nathan Fraikin, Laurence Van Melderen. Single-cell evidence for plasmid addiction mediated by toxin-antitoxin systems. Nucleic acids research. 2024, : Cited : 7Read More
- 27)- Azharul Islam, Anirban Chakraborty, Altaf H Sarker, Uma K Aryal, Lang Pan, Gulshan Sharma, Istvan Boldogh, Tapas Hazra. Site-specific acetylation of polynucleotide kinase 3'-phosphatase regulates its distinct role in DNA repair pathways. Nucleic acids research. 2024, : Cited : 1Read More
- 28)- Thomas Ziegelhoffer, Amit K Verma, Wojciech Delewski, Brenda A Schilke, Paige M Hill, Marcin Pitek, Jaroslaw Marszalek, Elizabeth A Craig. NAC and Zuotin/Hsp70 chaperone systems coexist at the ribosome tunnel exit in vivo. Nucleic acids research. 2024, : Cited : 0Read More
- 29)- Irene Sanchez-Lopez, Yolanda Orantos-Aguilera, Eulalia Pozo-Guisado, Alberto Alvarez-Barientos, Sergio Lilla, Sara Zanivan, Christophe Lachaud, Francisco Javier Martin-Romero. STIM1 translocation to the nucleus protects cells from DNA damage. Nucleic acids research. 2024, : Cited : 1Read More
- 30)- Barbara Trifault, Victoria Mamontova, Giacomo Cossa, Sabina Ganskih, Yuanjie Wei, Julia Hofstetter, Pranjali Bhandare, Apoorva Baluapuri, Blanca Nieto, Daniel Solvie, Carsten P Ade, Peter Gallant, Elmar Wolf, Dorthe H Larsen, Mathias Munschauer, Kaspar Burger. Nucleolar detention of NONO shields DNA double-strand breaks from aberrant transcripts. Nucleic acids research. 2024, : Cited : 3Read More
- 31)- Giada Finocchio, Balwina Koopal, Ana Potocnik, Clint Heijstek, Adrie H Westphal, Martin Jinek, Daan C Swarts. Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA. Nucleic acids research. 2024, : Cited : 6Read More
- 32)- Amber F Buhagiar, Benjamin Kleaveland. To kill a microRNA: emerging concepts in target-directed microRNA degradation. Nucleic acids research. 2024, : Cited : 4Read More
- 33)- Chenxi Qiu, Payal Arora, Indranil Malik, Amber J Laperuta, Emily M Pavlovic, Scott Ugochukwu, Mandar Naik, Craig D Kaplan. Thiolutin has complex effects in vivo but is a direct inhibitor of RNA polymerase II in vitro. Nucleic acids research. 2024, : Cited : 1Read More
- 34)- Chao Jin, Elias Einig, Wenshan Xu, Ravi Babu Kollampally, Andreas Schlosser, Michael Flentje, Nikita Popov. The dimeric deubiquitinase USP28 integrates 53BP1 and MYC functions to limit DNA damage. Nucleic acids research. 2024, : Cited : 1Read More
- 35)- Jinrui Xu, Jiahao Gao, Pengyu Ni, Mark Gerstein. Less-is-more: selecting transcription factor binding regions informative for motif inference. Nucleic acids research. 2024, : Cited : 1Read More
- 36)- Tiyaporn Tangpradabkul, Michael Palo, Jill Townley, Kenneth B Hsu, Eterna Participants, Sarah Smaga, Rhiju Das, Alanna Schepartz. Minimization of the E. coli ribosome, aided and optimized by community science. Nucleic acids research. 2024, : Cited : 1Read More
- 37)- Eric W Ottesen, Joonbae Seo, Diou Luo, Natalia N Singh, Ravindra N Singh. A super minigene with a short promoter and truncated introns recapitulates essential features of transcription and splicing regulation of the SMN1 and SMN2 genes. Nucleic acids research. 2024, : Cited : 4Read More
- 38)- Takehiko Shibata, Shukuko Ikawa, Wakana Iwasaki, Hiroyuki Sasanuma, Hisao Masai, Kouji Hirota. Homology recognition without double-stranded DNA-strand separation in D-loop formation by RecA. Nucleic acids research. 2024, : Cited : 0Read More
- 39)- Paula Blanco, Alberto Hipólito, Lucía García-Pastor, Filipa Trigo da Roza, Laura Toribio-Celestino, Alba Cristina Ortega, Ester Vergara, Álvaro San Millán, José Antonio Escudero. Identification of promoter activity in gene-less cassettes from Vibrionaceae superintegrons. Nucleic acids research. 2024, : Cited : 0Read More
- 40)- Juan F Santana, Benjamin M Spector, Gustavo A Suarez, Donal S Luse, David H Price. NELF focuses sites of initiation and maintains promoter architecture. Nucleic acids research. 2024, : Cited : 5Read More
- 41)- Dmytro Kompaniiets, Lina He, Dong Wang, Wei Zhou, Yang Yang, Yangbo Hu, Bin Liu. Structural basis for transcription activation by the nitrate-responsive regulator NarL. Nucleic acids research. 2024, : Cited : 2Read More
- 42)- Bo Pang, Haolan Zheng, Shijia Ma, Jiesheng Tian, Ying Wen. Nitric oxide sensor NsrR is the key direct regulator of magnetosome formation and nitrogen metabolism in Magnetospirillum. Nucleic acids research. 2024, : Cited : 0Read More
- 43)- Thomas C J Tan, Christos Spanos, David Tollervey. Improved detection and consistency of RNA-interacting proteomes using DIA SILAC. Nucleic acids research. 2024, : Cited : 1Read More
