1)- Felix Thalén, Clara G Köhne, Christoph Bleidorn. Patchwork: Alignment-Based Retrieval and Concatenation of Phylogenetic Markers from Genomic Data.Genome biology and evolution. 2023, 15 (12):
2)- Riddhi Gondhalekar, Christopher P Kempes, Shawn Erin McGlynn. Scaling of Protein Function across the Tree of Life.Genome biology and evolution. 2023, 15 (12):
3)- Anna Dudzik, Dmitrij Dedukh, Pierre-André Crochet, Beata Rozenblut-Kościsty, Hanna Rybka, Paul Doniol-Valcroze, Lukáš Choleva, Maria Ogielska, Magdalena Chmielewska. Cytogenetics of the Hybridogenetic Frog Pelophylax grafi and Its Parental Species Pelophylax perezi.Genome biology and evolution. 2023, 15 (12):
4)- Clare J Venney, Dafni Anastasiadi, Maren Wellenreuther, Louis Bernatchez. The Evolutionary Complexities of DNA Methylation in Animals: From Plasticity to Genetic Evolution.Genome biology and evolution. 2023, 15 (12):
5)- Maria Selifanova, Oleg Demianchenko, Elizaveta Noskova, Egor Pitikov, Denis Skvortsov, Jana Drozd, Nika Vatolkina, Polina Apel, Ekaterina Kolodyazhnaya, Margarita A Ezhova, Alexander B Tzetlin, Tatiana V Neretina, Dmitry A Knorre. ORFans in Mitochondrial Genomes of Marine Polychaete Polydora.Genome biology and evolution. 2023, 15 (12):
6)- Jose Rafael Dimayacyac, Shanyun Wu, Daohan Jiang, Matt Pennell. Evaluating the Performance of Widely Used Phylogenetic Models for Gene Expression Evolution.Genome biology and evolution. 2023, 15 (12):
7)- Reed T Boohar, Lauren E Vandepas, Nikki Traylor-Knowles, William E Browne. Phylogenetic and Protein Structure Analyses Provide Insight into the Evolution and Diversification of the CD36 Domain "Apex" among Scavenger Receptor Class B Proteins across Eukarya.Genome biology and evolution. 2023, 15 (12):
8)- Karolina Bryłka, Eveline Pinseel, Wade R Roberts, Elizabeth C Ruck, Daniel J Conley, Andrew J Alverson. Gene Duplication, Shifting Selection, and Dosage Balance of Silicon Transporter Proteins in Marine and Freshwater Diatoms.Genome biology and evolution. 2023, 15 (12):
9)- Tadeusz H Wroblewski, Kelsey E Witt, Seung-Been Lee, Ripan S Malhi, David Peede, Emilia Huerta-Sánchez, Fernando A Villanea, Katrina G Claw. Pharmacogenetic Variation in Neanderthals and Denisovans and Implications for Human Health and Response to Medications.Genome biology and evolution. 2023, 15 (12):
10)- Alexandre P Fernandes, Molly OhAinle, Pedro J Esteves. Patterns of Evolution of TRIM Genes Highlight the Evolutionary Plasticity of Antiviral Effectors in Mammals.Genome biology and evolution. 2023, 15 (12):
11)- Elizabeth Davalos-Dehullu, Sarah M Baty, Robert N Fisher, Peter A Scott, Greer A Dolby, Adrian Munguia-Vega, Diego Cortez. Chromosome-Level Genome Assembly of the Blacktail Brush Lizard, Urosaurus nigricaudus, Reveals Dosage Compensation in an Endemic Lizard.Genome biology and evolution. 2023, 15 (12):
12)- Lomous Kumar, Anuhya Chowdhari, Jaison J Sequeira, Mohammed S Mustak, Moinak Banerjee, Kumarasamy Thangaraj. Genetic Affinities and Adaptation of the South-West Coast Populations of India.Genome biology and evolution. 2023, 15 (12):
13)- Xavier Dallaire, Raphael Bouchard, Philippe Hénault, Gabriela Ulmo-Diaz, Eric Normandeau, Claire Mérot, Louis Bernatchez, Jean-Sébastien Moore. Widespread Deviant Patterns of Heterozygosity in Whole-Genome Sequencing Due to Autopolyploidy, Repeated Elements, and Duplication.Genome biology and evolution. 2023, 15 (12):
14)- Hanna Faist, Markus J Ankenbrand, Wiebke Sickel, Ute Hentschel, Alexander Keller, Rosalia Deeken. Opportunistic Bacteria of Grapevine Crown Galls Are Equipped with the Genomic Repertoire for Opine Utilization.Genome biology and evolution. 2023, 15 (12):
15)- Matthew J Penn, Neil Scheidwasser, Joseph Penn, Christl A Donnelly, David A Duchêne, Samir Bhatt. Leaping through Tree Space: Continuous Phylogenetic Inference for Rooted and Unrooted Trees.Genome biology and evolution. 2023, 15 (12):
16)- Christian Schlötterer. Unraveling the Molecular Basis of Stabilizing Selection by Experimental Evolution.Genome biology and evolution. 2023, 15 (12):
17)- Keila Velazquez-Arcelay, Laura L Colbran, Evonne McArthur, Colin M Brand, David C Rinker, Justin K Siemann, Douglas G McMahon, John A Capra. Archaic Introgression Shaped Human Circadian Traits.Genome biology and evolution. 2023, 15 (12):
18)- . Correction to: Chromosome-Level Assemblies of the Pieris mannii Butterfly Genome Suggest Z-Origin and Rapid Evolution of the W Chromosome.Genome biology and evolution. 2023, 15 (12):
19)- Anne A Nakamoto, Pierre M Joubert, Ksenia V Krasileva. Intraspecific Variation of Transposable Elements Reveals Differences in the Evolutionary History of Fungal Phytopathogen Pathotypes.Genome biology and evolution. 2023, 15 (12):
23)- Zhiqiang Ye, Michael E Pfrender, Michael Lynch. Evolutionary Genomics of Sister Species Differing in Effective Population Sizes and Recombination Rates.Genome biology and evolution. 2023, 15 (11):
24)- Alejandra Bodelón, Marie Fablet, Daniel Siqueira de Oliveira, Cristina Vieira, Maria Pilar García Guerreiro. Impact of Heat Stress on Transposable Element Expression and Derived Small RNAs in Drosophila subobscura.Genome biology and evolution. 2023, 15 (11):
25)- Eleanor A L Pratt, Luciano B Beheregaray, Pedro Fruet, Gabriela Tezanos-Pinto, Kerstin Bilgmann, Nikki Zanardo, Fernando Diaz-Aguirre, Eduardo R Secchi, Thales R O Freitas, Luciana M Möller. Genomic Divergence and the Evolution of Ecotypes in Bottlenose Dolphins (Genus Tursiops).Genome biology and evolution. 2023, 15 (11):
26)- Theodore G Schurr, Ramaz Shengelia, Michel Shamoon-Pour, David Chitanava, Shorena Laliashvili, Irma Laliashvili, Redate Kibret, Yanu Kume-Kangkolo, Irakli Akhvlediani, Lia Bitadze, Iain Mathieson, Aram Yardumian. Genetic Analysis of Mingrelians Reveals Long-Term Continuity of Populations in Western Georgia (Caucasus).Genome biology and evolution. 2023, 15 (11):
27)- Gilles Dupouy, Ronan Cashell, Galina Brychkova, Reetu Tuteja, Peter C McKeown, Charles Spillane. PICKLE RELATED 2 is a Neofunctionalized Gene Duplicate Under Positive Selection With Antagonistic Effects to the Ancestral PICKLE Gene on the Seed Transcriptome.Genome biology and evolution. 2023, 15 (11):
29)- George Sandler, Aneil F Agrawal, Stephen I Wright. Population Genomics of the Facultatively Sexual Liverwort Marchantia polymorpha.Genome biology and evolution. 2023, 15 (11):
30)- Yangtsho Gyaltshen, Andrey Rozenberg, Amber Paasch, John A Burns, Sally Warring, Raegan T Larson, Xyrus X Maurer-Alcalá, Joel Dacks, Apurva Narechania, Eunsoo Kim. Long-Read-Based Genome Assembly Reveals Numerous Endogenous Viral Elements in the Green Algal Bacterivore Cymbomonas tetramitiformis.Genome biology and evolution. 2023, 15 (11):
31)- Richard P Brown, Hui Sun, Yuanting Jin, Carlo Meloro. Habitat-associated Genomic Variation in a Wall Lizard from an Oceanic Island.Genome biology and evolution. 2023, 15 (11):
32)- Peter D Fields, Melody M Weber, Gus Waneka, Amanda K Broz, Daniel B Sloan. Chromosome-Level Genome Assembly for the Angiosperm Silene conica.Genome biology and evolution. 2023, 15 (11):
33)- Marta Tomaszkiewicz, Kristoffer Sahlin, Paul Medvedev, Kateryna D Makova. Transcript Isoform Diversity of Ampliconic Genes on the Y Chromosome of Great Apes.Genome biology and evolution. 2023, 15 (11):
34)- Justin C Fay, Javier Alonso-Del-Real, James H Miller, Amparo Querol. Divergence in the Saccharomyces Species' Heat Shock Response Is Indicative of Their Thermal Tolerance.Genome biology and evolution. 2023, 15 (11):
35)- Maxime Courcelle, Pierre-Henri Fabre, Emmanuel J P Douzery. Phylogeny, Ecology, and Gene Families Covariation Shaped the Olfactory Subgenome of Rodents.Genome biology and evolution. 2023, 15 (11):
36)- Osamu Miura, Atsushi Toyoda, Tetsuya Sakurai. Chromosome-Scale Genome Assembly of the Freshwater Snail Semisulcospira habei from the Lake Biwa Drainage System.Genome biology and evolution. 2023, 15 (11):
37)- John W Terbot, Brandon S Cooper, Jeffrey M Good, Jeffrey D Jensen. A Simulation Framework for Modeling the Within-Patient Evolutionary Dynamics of SARS-CoV-2.Genome biology and evolution. 2023, 15 (11):
38)- Jody M Taft, Krystal A Tolley, Graham J Alexander, Anthony J Geneva. De Novo Whole Genome Assemblies for Two Southern African Dwarf Chameleons (Bradypodion, Chamaeleonidae).Genome biology and evolution. 2023, 15 (10):
39)- Tanguy Lallemand, Martin Leduc, Adèle Desmazières, Sébastien Aubourg, Carène Rizzon, Claudine Landès, Jean-Marc Celton. Insights into the Evolution of Ohnologous Sequences and Their Epigenetic Marks Post-WGD in Malus Domestica.Genome biology and evolution. 2023, 15 (10):
40)- Kaylee S Herzog, Jennifer L Hackett, Paul M Hime, Lukas B Klicka, Kirsten Jensen. First Insights into Population Structure and Genetic Diversity Versus Host Specificity in Trypanorhynch Tapeworms Using Multiplexed Shotgun Genotyping.Genome biology and evolution. 2023, 15 (10):
41)- Nathaniel P Sharp, Denise R Smith, Gregory Driscoll, Kexin Sun, Catherine M Vickerman, Sterling C T Martin. Contribution of Spontaneous Mutations to Quantitative and Molecular Variation at the Highly Repetitive rDNA Locus in Yeast.Genome biology and evolution. 2023, 15 (10):
42)- Filippo Nicolini, Fabrizio Ghiselli, Andrea Luchetti, Liliana Milani. Bivalves as Emerging Model Systems to Study the Mechanisms and Evolution of Sex Determination: A Genomic Point of View.Genome biology and evolution. 2023, 15 (10):
44)- Aivars Cīrulis, Anna K Nordén, Allison M Churcher, Steven A Ramm, Kira S Zadesenets, Jessica K Abbott. Sex-limited experimental evolution drives transcriptomic divergence in a hermaphrodite.Genome biology and evolution. 2023, :
45)- Ana Filipa Moutinho, Adam Eyre-Walker. No evidence that selection on synonymous codon usage affects patterns of protein evolution in bacteria.Genome biology and evolution. 2023, :
46)- Angela McGaughran, Manpreet K Dhami, Elahe Parvizi, Amy L Vaughan, Dianne M Gleeson, Kathryn A Hodgins, Lee A Rollins, Carolyn K Tepolt, Kathryn G Turner, Kamolphat Atsawawaranunt, Paul Battlay, Carlos Congrains, Angelica Crottini, Tristan P W Dennis, Claudia Lange, Xiaoyue P Liu, Paige Matheson, Henry L North, Iva Popovic, Marc Rius, Anna W Santure, Katarina C Stuart, Hui Zhen Tan, Cui Wang, Jonathan Wilson. Genomic tools in biological invasions: current state and future frontiers.Genome biology and evolution. 2023, :
48)- Cyril J Versoza, Sarah Weiss, Ravneet Johal, Bruno La Rosa, Jeffrey D Jensen, Susanne P Pfeifer. Novel insights into the landscape of crossover and non-crossover events in rhesus macaques (Macaca mulatta).Genome biology and evolution. 2023, :
50)- James F Fleming, Davide Pisani, Kazuharu Arakawa. The evolution of temperature and desiccation-related protein families in Tardigrada reveals the complex acquisition of extremotolerance.Genome biology and evolution. 2023, :